PAGA plotting clips edges
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- Dominant language
- Python
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Description
If I plot PAGA with node sizes larger than the default, the edges are clipped in the resulting plot.
scanpy.pl.paga(adata, node_size_scale=5)
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the issue with scanpy.pl.paga(adata, node_size_scale=5), then trace the PAGA plotting entry point to find how enlarged nodes affect edge boundaries. Done means PAGA edges remain fully visible when node sizes exceed the default.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100