feature request for embedding_density()
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 2.6k
- Forks
- 779
- Avg merge
- 1d 4h
- Merged PRs (30d)
- 27
Description
Hi @LuckyMD, I'm trying out embedding_density() using the latest scanpy version.
First of all, this is a wonderful feature - thank you!
Second, I was wondering if it would be possible to extend this and create a 'differential density' to visualize differences between two conditions? (possibly on a lower resolution grid?)
btw. there is a typo on https://icb-scanpy.readthedocs-hosted.com/en/latest/index.html under Master: the name is switched to 'density_embedding()
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the existing embedding_density() entry point and its documentation to understand the current visualization behavior. Define how differential density should compare two conditions and whether a lower-resolution grid is appropriate; completion should include an agreed implementation and documentation update correcting the density_embedding() typo on the linked page.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, data-visualization
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 25/100