How to extract cells co-expressing certain genes of interest ?
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Question
- Dominant language
- Python
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Description
Is there a way to extract cells that are co-expressing my genes of interest ? How can I make a UMAP plot showing these cells similar to the single gene UMAP plots ?
Thanks.
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Research direction
The issue does not name files, tests, or a specific entry point. Start by locating Scanpy's cell-selection and UMAP plotting documentation or examples, then clarify a supported workflow for selecting cells co-expressing several genes and displaying them in a UMAP. Done means the documented example answers both extraction and plotting questions.
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Assessment
- Tech stack
- python
- Domain
- bioinformatics, data-visualization
- Issue type
- Documentation
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100