scverse / scverse/scanpy

`anndata.acc` replacement for functions taking `obsm`, `layer`, …

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Area – API
Dominant language
Python
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Merged PRs (30d)
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Description

What kind of feature would you like to request?

Additional function parameters / changed functionality / changed defaults?

Please describe your wishes

this probably also means coming up with an in_/out pair and maybe copy/inplace

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reviewing the existing functions that accept obsm, layer, and related inputs, then examine the intended anndata.acc replacement. Define the scope for the in_/out parameter pair and decide how copy or inplace behavior should fit; completion requires a settled API design and corresponding functionality.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics, data
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Active
Clarity
Needs clarification
Newbie friendliness
25/100

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