scverse / scverse/scanpy

Integration Testing CI Test Failure on python 3.13

Open
#3,935 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Dominant language
Python
Stars
2.6k
Forks
779
Avg merge
1d 4h
Merged PRs (30d)
27

Description

The daily CI failed on test for scanpy failed. Please go to the logs of the integration testing repo to review. @scverse/anndata

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reviewing the linked integration-testing repository logs for the failed Scanpy test under Python 3.13. Identify the reported failure and trace it to the relevant Scanpy or Anndata integration behavior. Done means the daily integration test passes on Python 3.13.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
ci-cd, testing
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.