negative values after score_genes with log1P or counts layer
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- Python
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Description
Hi,
I got negative values after run score_genes with log1P or counts layer like below:
using layers['counts']:
using layers['counts']:
Is this reasonable?
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Research direction
The issue names score_genes and the log1P/counts layers, but no file or test. Start by reproducing the reported negative values for both layer choices and trace score_genes. Done means establishing whether the values are expected and recording the confirmed behavior.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100