`io` submodule from `anndata`
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- Dominant language
- Python
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Description
What kind of feature would you like to request?
Other?
Please describe your wishes
We need to handle https://github.com/scverse/anndata/pull/1682 here so that warnings are not thrown on import.
- remove all references to
anndata._iofrom inside the codebase if there are any - move all
anndata.read_xxxxusages toanndata.io.read_xxxxhttps://github.com/scverse/scanpy/pull/3289 - Remove deprecated
anndata.readfunction
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by searching the codebase for references to anndata._io and the deprecated anndata.read function. Review the migration noted in scverse/scanpy#3289 and the linked anndata pull request for context. Done means no internal anndata._io references remain and deprecated anndata.read usage has been removed.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Refactor
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100