FindConservedMarkers implementaion in Scanpy
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- Dominant language
- Python
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Description
What kind of feature would you like to request?
Additional function parameters / changed functionality / changed defaults?
Please describe your wishes
Hi, thanks for your efforts for maintaining this wonderful framework! I was wondering if there is an implementaion of Seurat FindConservedMarkers function in Scanpy, which can perform DGE analysis per group(e.g datasets) then combine them. It could be extreme useful especially when batch effects exist.
Thanks in advance!
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
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Research direction
No files, tests, or entry points are named. Start by reviewing Scanpy's existing differential gene expression functionality and comparing it with Seurat's FindConservedMarkers behavior. Done means providing equivalent per-group DGE analysis that can combine results across datasets or groups while addressing batch effects.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100