StackedViolin as Seurat violin plot
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- Dominant language
- Python
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Description
Hi,
My issue is similar to that in #2298
I solved the issue of inputting specific colors with the row_palette argument in sc.pl.StackedViolin(), but when using swap_axes to have the same plot as in Seurat (bottom image), it colors genes (rows) instead clusters. Is there any way to input the palette list by columns instead of by rows?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start at sc.pl.StackedViolin(), focusing on how row_palette is applied when swap_axes is enabled. Reproduce the Seurat-style plot with a column-oriented palette and verify that colors follow clusters rather than genes.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100