scverse / scverse/scanpy

`sc.pl.stacked_violin` legend shows the group median by default, How can I show the group means instead?

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Description

  • Additional function parameters / changed functionality / changed defaults?
  • New analysis tool: A simple analysis tool you have been using and are missing in sc.tools?
  • New plotting function: A kind of plot you would like to seein sc.pl?
  • External tools: Do you know an existing package that should go into sc.external.*?
  • Other?

...
sc.pl.stacked_violin legend shows the group median by default, How can I show the group means instead?

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Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the sc.pl.stacked_violin entry point and its documentation to trace how the legend currently displays group medians. Determine how users could select group means instead, and consider the documentation or coverage needed to make the option clear and verifiable.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data-visualization
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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