scverse / scverse/scanpy

Why not give users the ability to save figures how/where they please?

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Python
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Description

In the heatmap docs:

save : Union[str, bool, None] (default: None)
... A string is appended to the default filename

Unlike matplotlib, scanpy forces the user to adopt a naming scheme for files. Why not trust the user to name their files as they please? It's annoying and difficult to work around this.

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the scanpy.pl.heatmap documentation and trace how its save option determines the output filename. Check the existing plotting save behavior before deciding how a user-supplied name or path should be handled. Done means heatmap figures can be saved with the user's chosen filename or location without the default naming scheme.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data-visualization
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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