Add counts layer automatically
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Area – API
- Dominant language
- Python
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Description
- Additional function parameters / changed functionality / changed defaults?
Hi there,
it would be great to have the counts layer being added automatically to the anndata object when data is being normalised. Could this be added to the sc.pp.normalize_total function?
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Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the sc.pp.normalize_total entry point and how it handles AnnData objects. Determine how the counts layer should be represented after normalization; done means normalization automatically adds that layer to the AnnData object and the behavior is covered by an appropriate test.
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Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100