PAGA plot resets colors
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Area - Plotting 🌺
- Dominant language
- Python
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Description
- I have checked that this issue has not already been reported.
- I have confirmed this bug exists on the latest version of scanpy.
- (optional) I have confirmed this bug exists on the master branch of scanpy.
Version: '1.8.0.dev70+g560bd5d3'
I set custom colors for my obs col in uns, but when I use pl.paga or pl.paga_compare a different set of colours is used and the uns is changed.
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Research direction
Reproduce the behavior with pl.paga and pl.paga_compare using custom colors stored for an obs column in uns. First verify whether the bug still occurs on the latest version or master branch, then trace how these plotting entry points read and update uns. Done means both plots retain the custom colors and do not modify the stored values.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, data-visualization
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100