scverse / scverse/scanpy

Can PDF/SVG saved figures maintain text as text for further processing?

Open
#1,720 7 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Dominant language
Python
Stars
2.6k
Forks
779
Avg merge
1d 4h
Merged PRs (30d)
27

Description

  • Additional function parameters / changed functionality / changed defaults?

Hi there, I have continuously tried to save my dotplots and umaps from scanpy in PDF or SVG
format with the hope to be able and import it on Illustrator for further processing for publication
purposes. Everything works fine with the images, but the text of the labels is not any more recognized
as text and thus I cannot change the family font/size or correct the text if need be.

Any chance you guys have a plan to allow for this type of functionality shortly?

Best,
Anastasia

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

The issue does not name files, tests, or entry points. Start by locating how Scanpy saves dotplot and UMAP figures to PDF or SVG, then determine whether labels can remain editable text for Illustrator; done means exported labels are recognized as text and remain font- and size-editable.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data-visualization
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.