Matrixplot alternative group statistics
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Area - Plotting 🌺
- Dominant language
- Python
- Stars
- 2.6k
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- Avg merge
- 1d 4h
- Merged PRs (30d)
- 27
Description
- Additional function parameters / changed functionality / changed defaults?
- New analysis tool: A simple analysis tool you have been using and are missing in
sc.tools? - New plotting function: A kind of plot you would like to seein
sc.pl? - External tools: Do you know an existing package that should go into
sc.external.*? - Other?
It would be great to see alternative statistics to "mean" in matrixplot, e.g., median, variance come to mind.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start at the scanpy.pl.matrixplot API entry point linked in the issue and trace how its current mean statistic is selected. Check the related plotting tests or examples if present. Done means matrixplot supports documented alternatives such as median and variance while preserving the existing mean behavior.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100