densmap
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- Python
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Description
This seems related to the new Densmap feature https://umap-learn.readthedocs.io/en/latest/densmap_demo.html (see https://www.biorxiv.org/content/10.1101/2020.05.12.077776v1)
Would be cool to support it in scanpy.
Originally posted by @gokceneraslan in https://github.com/theislab/scanpy/issues/1509#issuecomment-748156450
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the linked Densmap demo and the referenced BioRxiv paper, then review the original Scanpy issue linked in the attribution. Define what supporting Densmap in Scanpy should include and how completion will be verified, since this issue does not name files, tests, or an implementation entry point.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization, machine-learning
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100