scverse / scverse/scanpy

umap axes rotated

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Question
Dominant language
Python
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Avg merge
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Merged PRs (30d)
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Description

Hello,
I am not sure if it is a bug or not. Is it possible that the umap plots can be rotated running scanpy with the same parameters?
Thank you.

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Research direction

The issue names no source file, test, or specific plotting entry point. Start by reviewing the nine-comment discussion and reproducing the UMAP plots with identical parameters; done means determining whether the differing axis orientation is expected or documenting a confirmed reproducible bug.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data-visualization
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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