tracksplot wrong highlight groups (no brackets)
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Since Jun 16, 2020.
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Description
sc.pl.tracksplot, produce a wrong highlight bar without brackets.
pbmc = sc.datasets.pbmc68k_reduced()
marker_genes = ['S100A8', 'GNLY', 'NKG7', 'KLRB1', 'FCGR3A', 'FCER1A', 'CST3']
ax = sc.pl.tracksplot(pbmc,marker_genes, groupby='louvain',
var_group_positions=[(0,2),(4,5)],var_group_labels=['set1','set2'])

Versions:
scanpy==1.4.7.dev136+g7f5c907 anndata==0.7.1 umap==0.4.1 numpy==1.18.3 scipy==1.4.1 pandas==1.0.3
...
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