scverse / scverse/napari-spatialdata
Is it possible to show two different channels of the same image as different layers?
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 90
- Forks
- 25
- Avg merge
- 22m
- Merged PRs (30d)
- 1
Description
I am experimenting with a Xenium dataset that was run with the cell segmentation staining kit.
This result in a Spatialdata object with an image element morphology_focus with the channels for the different segmenation stains.
See above (5) the different channels of the image.
What works adding the same image channels as two separate layers ((1),(2)) with different colormaps (4) and making a comosite by adjusting translucence (3)
What I did not figure out Showing two different channels
When I change they channel of one layer (5) the other layer also automatically switches to the same channel.
Is there a way to do this?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the Xenium dataset example with the morphology_focus image and its segmentation-stain channels. The work is done when two layers from the same image can display different channels independently, while retaining separate colormaps and translucence settings.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100