scverse / scverse/napari-spatialdata
about Interactive(sdata)
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- Dominant language
- Python
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- Forks
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Description
...zarr_path = "./Xenium_V1_humanLung_Cancer_FFPE_outs.zarr"
from spatialdata import SpatialData
from napari_spatialdata import Interactive
if name == "main":
sdata = SpatialData.read(zarr_path) # Change this path!
i = Interactive(sdata)
i
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The issue provides only a Python example using SpatialData.read and Interactive with a local .zarr path; no file, test, or requested outcome is named. First clarify what behavior in the screenshot is problematic, then reproduce the example and identify the relevant Interactive entry point. Done requires an agreed question and either a documented usage answer or a clearly scoped fix.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization
- Issue type
- Documentation
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100