scverse / scverse/napari-spatialdata
Test plotting annotations
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good first issue
- Dominant language
- Python
- Stars
- 90
- Forks
- 25
- Avg merge
- 22m
- Merged PRs (30d)
- 1
Description
Tests were missing for plotting variables from obsm and plotting continuous obs. We should:
- carefully check which tests are available and which missing. The possible tests are the cross product between:
- categorical or continuous variables
- plotted on:
obs,var,varfrom a differentlayer,obsm, "dataframe column". (varandobsmcan only be continuous variables). - add the missing tests
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Review the existing plotting tests and compare coverage across categorical and continuous variables, including obs, var, another layer's var, obsm, and dataframe columns. Add tests for the missing combinations, then run the plotting test suite and confirm the cross product is covered.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-visualization, testing
- Issue type
- Refactor
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 30/100