scverse / scverse/napari-spatialdata
napari can only save the first shape
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- Dominant language
- Python
- Stars
- 90
- Forks
- 25
- Avg merge
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- Merged PRs (30d)
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Description
Hi,
When I added multiple shapes using napari-spatialdata, I found only the first shape were saved in spataildata object:
The second and third shapes cannot be displayed in jupyter notebook:
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the multiple-shape workflow in napari-spatialdata and compare the saved spatialdata object with its Jupyter notebook rendering. Trace the shape-saving and notebook-display entry points, then verify that all added shapes are persisted and displayed.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter, python
- Domain
- data-visualization
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100