scverse / scverse/napari-spatialdata

colormap is not considered using napari squidpy plugin

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#25 8 comments 0 reactions 2 assignees View on GitHub

@rahulbshrestha is already working on this.

Since Jun 16, 2023.

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Description

Description

I can not change the color map of the spatial transcriptomic data in Napari

...

Minimal reproducible example

viewer = napari.Viewer()
viewer.add_image(
img1,
colormap='plasma',
name="test",
metadata={"adata": adata, "library_id": "test"},
)

colormap='plasma' is not considered

Many thanks
Sophie

...

Traceback

...

Version

...

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