scverse / scverse/gget

ENCODE downloader

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#151 3 comments 0 reactions 0 assignees View on GitHub

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enhancement
Dominant language
Python
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Forks
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Description

Request type

New module

Request description

It would be cool to have a module as gget ENCODE, similar to https://github.com/kundajelab/ENCODE_downloader.

Example command

https://github.com/kundajelab/ENCODE_downloader/?tab=readme-ov-file#examples

Example return value

No response

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

No repository file or test is named. Start by reviewing existing gget module entry points and comparing the linked ENCODE_downloader examples; done means the requested gget ENCODE command is defined with behavior matching the stated reference.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics, cli, databases
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Quiet
Clarity
Needs clarification
Newbie friendliness
35/100

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