scverse / scverse/fast-array-utils
Maybe support stats for `anndata.abc.CS*Dataset` with anndata 0.12
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type: disk
- Dominant language
- Python
- Stars
- 15
- Forks
- 5
- Avg merge
- 10h 33m
- Merged PRs (30d)
- 9
Description
We might be able to run sum, mean, and maybe even mean_var on it with sparrays:
with anndata.settings.override(use_sparse_array_on_read=True):
return np.sum(sds)
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- Read the whole issue, then the project's contributing guide.
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Research direction
No files or tests are named. Start from the anndata.settings.override(use_sparse_array_on_read=True) example and inspect the existing handling of np.sum, mean, and mean_var for anndata.abc.CS*Dataset; done means the supported statistics work for that dataset type.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- numpy, python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100