scverse / scverse/decoupler

Collectri Download is Unpredictable via Zenodo

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Dominant language
Python
Stars
294
Forks
38
Avg merge
4d 17h
Merged PRs (30d)
3

Description

Report

See:
https://github.com/scverse/liana/actions/runs/34322201595/job/102371160845

Is it possible to move the databases under some github release, lamin, or AW3 @PauBadiaM

This has been quite stable for metalinks (and is versioned):
https://github.com/scverse/liana/blob/d4211373692e7b9c10210488ccb1efe06452b097/src/liana/resource/get_metalinks.py#L10

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Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the linked GitHub Actions job to reproduce or inspect the unpredictable Collectri download, then trace the database download entry point in the decoupler repository. Compare it with the versioned metalink handling shown in src/liana/resource/get_metalinks.py; done means the databases are hosted through a stable, versioned source and the workflow completes reliably.

Written by the indexing model from the issue text.

Assessment

Tech stack
github-actions, python
Domain
ci-cd, data
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Active
Clarity
Needs clarification
Newbie friendliness
48/100

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