Test failures as of 0.11.4 on NixOS
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Description
Please make sure these conditions are met
- I have checked that this issue has not already been reported.
- I have confirmed this bug exists on the latest version of anndata.
- (optional) I have confirmed this bug exists on the master branch of anndata.
Report
I'm seeing a number of test failures as of the latest version, 0.11.4,
=========================== short test summary info ============================
FAILED tests/test_concatenate.py::test_concat_dask_sparse_matches_memory[outer-only] - AssertionError:
FAILED tests/test_concatenate.py::test_concat_dask_sparse_matches_memory[outer-first] - AssertionError:
FAILED tests/test_concatenate.py::test_concat_dask_sparse_matches_memory[outer-same] - AssertionError:
FAILED tests/test_concatenate.py::test_concat_dask_sparse_matches_memory[outer-unique] - AssertionError:
FAILED tests/test_concatenate.py::test_concat_dask_sparse_matches_memory[outer-None] - AssertionError:
= 5 failed, 3265 passed, 23 skipped, 74 xfailed, 324 warnings in 89.90s (0:01:29) =
Full logs available here: https://gist.github.com/samuela/cb1e21408c78ff89726fcb2caf213532
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Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the five failing cases in tests/test_concatenate.py::test_concat_dask_sparse_matches_memory and compare their NixOS failures with the full logs in the linked gist. Investigate why the dask sparse and in-memory concatenation results differ in each parameterization. Done means the reported failures pass without regressing the existing test suite.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data, testing-qa
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100