unable to install a functioning app on a fresh environment
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- Dominant language
- Python
- Stars
- 323
- Forks
- 43
- PR merge metrics
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Description
Tried installing snapatac2 with micromamba either from conda-forge or with pip.
tried creating a fresh new environment and just install snapatac and the minimum requirements
every time I try to run the pbmc tutorial it runs into errors as soon as I get to snap.pl.frag_size_distr(data, interactive=False) (and the other plot too)
and then again on snap.tl.umap(data).
I suspect your latest version is incompatible with the latest versions of some of the dependencies.
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First steps
- Read the whole issue, then the project's contributing guide.
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- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Reproduce the installation with micromamba or pip in a fresh environment, then run the PBMC tutorial. Start with snap.pl.frag_size_distr(data, interactive=False) and snap.tl.umap(data), recording the dependency versions and full errors. Done means a fresh installation can run both tutorial steps without errors.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100