Vignette for downstream analysis tools?
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- Dominant language
- Python
- Stars
- 323
- Forks
- 43
- PR merge metrics
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Description
Hello @kaizhang and thank you for this great software. I am curious if you have any vignettes available that walk through some of the downstream functions like
tl.link_tf_to_gene or tl.add_tf_binding similar to some of the visualizations in snapatac, like those included in some of the vignettes here e.g., snapatac - predict gene/enhancer pairs
Thanks! Zack
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Research direction
Start by reviewing the downstream functions tl.link_tf_to_gene and tl.add_tf_binding, then compare their usage with the linked SnapATAC gene/peak-pair example. Done would mean adding clearly scoped vignettes that explain these workflows and their visualizations, although the issue does not identify documentation files or a precise expected scope.
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Assessment
- Tech stack
- python
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100