'list' object has no attribute 'intersection'
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- Python
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Description
Hi, @kaizhang . Thanks for developing SnapATAC2. When I was running the anndata.concat function in the "Annotating cell clusters by integrating single-cell RNA-seq data" tutorial, an error occurred "AttributeError: 'list' object has no attribute 'intersection'"
the "reference" data was generated by Scanpy and scVI, the query was generated by SnapATAC2. They are shown below
Could you help me solve this problem? Thanks very much.
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Research direction
Reproduce the error by following the "Annotating cell clusters by integrating single-cell RNA-seq data" tutorial and reaching the anndata.concat call. Inspect how the Scanpy/scVI reference and SnapATAC2 query data are passed there, then verify that the tutorial completes without the AttributeError.
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Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 32/100