scverse / scverse/SnapATAC2

Add support to convert AnnData to Seurat v5

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#196 6 comments 0 reactions 1 assignee View on GitHub

@beyondpie is already working on this.

Since Feb 7, 2024.

enhancement :sparkles:
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Description

Hi Kai,

https://github.com/beyondpie/CEMBA_wmb_snATAC/blob/c48737ddf360519231721b63cc81a0fc75d83cca/02.integration/src/main/R/annToS5.R#L36C9-L36C9

Here is how I did the transformation for gmat.

We can also think about how to transform AnnData to Signac object, where they support cicero and other analysis, too.

Songpeng

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