fitType = local for vst function
Open
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enhancement
- Dominant language
- Python
- Stars
- 761
- Forks
- 90
- Avg merge
- 25m
- Merged PRs (30d)
- 10
Description
Is your feature request related to a problem? Please describe.
vst doent have 'local' as a fitType option
Describe the solution you'd like
If vst could also have local as an option, that would be great
Describe alternatives you've considered
Alternatively, I just import my code into R and do it from there
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the vst entry point and the handling of fitType options in PyDESeq2. Compare the existing options with the requested local behavior and identify relevant tests or examples before making a change. Done means vst accepts fitType='local' and its behavior is covered by tests.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100