sanger / sanger/lighthouse

DPL-470 - LSPA date tested in future

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Data integrity Enhancement
Dominant language
Python
Stars
2
Forks
1
PR merge metrics
No merged PRs in 30d

Description

A data fix requested by PAM, third priority from this list.

Description
One LSPA plate was sent with the date_tested in mdy format. This needs to be changed to dmy format.
Ideally this should be dealt with in MLWH. It should also be dealt with in the MongoDB and any other databases/tables they may appear in (the MLWH sample table, SequenceScape, Events Warehouse).

Main Contacts
Alan K

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by tracing the affected LSPA plate and its date_tested value through MLWH and MongoDB, then check the MLWH sample table, SequenceScape, and Events Warehouse. Done means the value uses dmy format consistently in every named location where it appears.

Written by the indexing model from the issue text.

Assessment

Tech stack
mongodb, python
Domain
data-engineering, databases
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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