[E::bcf_hdr_read] Failed to read BCF header
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Assessment
- Difficulty
- 5/5
- Estimated time
- Over a week
- Newbie friendliness
- 15/100
- Issue type
- Bug
- Clarity
- Needs clarification
- Activity status
- Stale
- Tech stack
- c
- Domain
- bioinformatics
Research direction
The report mentions Samtools, Bcftools, sugar pine, and a BCF header error, but names no source file, test, command, or input file. Start by gathering the missing command and input details; the report does not define a reproducible change or what completion would look like.
Written by the indexing model from the issue text.
Description
Hi,
I am using Samtools and Bcftools to call SNPs with sugar pine as a reference (58407655 scaffolds). I met an error message "[E::bcf_hdr_read] Failed to read BCF header". Could anyone can help me fix this?
Best,
Wei
- Dominant language
- C
- Stars
- 891
- Forks
- 277
- Avg merge
- 2d 23h
- Merged PRs (30d)
- 2
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