salilab / salilab/optrep

Add an option to add different set of CG bead sizes for different domains

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Dominant language
Python
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0
Forks
1
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No merged PRs in 30d

Description

Some domains can be helices and may require bead sizes like [1,2,3,4,5] residues per bead. Some maybe loops and may require bead sizes like [10,20,30]...

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

The issue names no files, tests, or entry points. First locate how bead sizes and domains are currently represented, then determine the configuration and behavior needed for different bead-size sets per domain; done should include a defined interface and coverage for the helix and loop examples.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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