salilab / salilab/imp_analysis_tutorial
running modeling.py in a cluster environment
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- Python
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Description
Hi,
I would like to perform the computational expensive modeling.py across multiple nodes.
However, it seems like modeling.py with its associated script is made for a single machine.
Do you have any examples or recommendations how to accomplish that?
I assume that i need to use mpi but I'm not sure how to properly modify to maximize the speed, efficiency, and replica exchange across nodes.
Thanks.
best,
hee jong
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- Read the whole issue, then the project's contributing guide.
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Research direction
Read modeling.py and its associated script first to understand the current single-machine workflow. Determine what concrete multi-node MPI or replica-exchange guidance is needed, then document an example or recommendation and define completion as a reproducible cluster workflow.
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Assessment
- Tech stack
- python
- Domain
- distributed-systems, hpc
- Issue type
- Documentation
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100