Is overrideCommand in settings.json outdated?

Summary

I tried using r-a on rustc code via neovim. Neovim uses the vscode settings from .vscode/settings.json. I got the following error in neovim:

rust-analyzer health status is [error]:                                                                                                                                                                                                                                                                              
Failed to run build scripts of some packages.                                                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                              
Please refer to the logs for more details on the errors.cargo check failed to start: Cargo watcher failed, the command produced no valid metadata (exit code: ExitStatus(unix_wait_status(512))):                                                                                                                             
/usr/tce/packages/python/python/bin/python3: can't open file '/tmp/drehwald1/prog/rust/src/bootstrap/x.py': [Errno 2] No such file or directory                            

Command used

nvim src/bootstrap/src/core/build_steps/llvm.rs

Expected behaviour

goto-definition etc. work

Actual behaviour

It gave the error shown above

Bootstrap configuration (bootstrap.toml)

<config>

Operating system

linux

HEAD

f392ed53ca3884c96430f2a283ffffa836b204f5

Additional context

<log>

    3     "rust-analyzer.check.overrideCommand": [
    4         "python3",   
    5         "x.py",
    6         "check",
    7         "--json-output"
    8     ],
[...]
   23     "rust-analyzer.cargo.buildScripts.overrideCommand": [
   24         "python3",
   25         "x.py",
   26         "check",
   27         "--json-output",
   28         "--compile-time-deps"
   29     ],

Start with src/etc/rust_analyzer_settings.json and compare its overrideCommand entries with the current bootstrap entry points, especially x.py and src/bootstrap/bootstrap.py. Reproduce the issue with the reported Neovim command and rust-analyzer logs; done means the repository settings no longer invoke a missing path and goto-definition and related checks work.