rust-lang / rust-lang/libz-sys
crate wants to install to /usr/local during building
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question
- Dominant language
- Rust
- Stars
- 138
- Forks
- 88
- PR merge metrics
- No merged PRs in 30d
Description
When building the crate (at least as a dependency, with zlib-ng and static feature enabled), it want to install stuff into /usr/local.
Example:
Compiling libz-sys v1.1.8
error: failed to run custom build command for `libz-sys v1.1.8`
Caused by:
process didn't exit successfully: `/projects/koesterlab/varlociraptor-clinical-testcases/target/debug/build/libz-sys-bff081efc5b46ae9/build-script-build` (exit status: 101)
--- stdout
cargo:rerun-if-env-changed=LIBZ_SYS_STATIC
cargo:rerun-if-changed=build.rs
CMAKE_TOOLCHAIN_FILE_x86_64-unknown-linux-gnu = None
CMAKE_TOOLCHAIN_FILE_x86_64_unknown_linux_gnu = None
HOST_CMAKE_TOOLCHAIN_FILE = None
CMAKE_TOOLCHAIN_FILE = None
CMAKE_GENERATOR_x86_64-unknown-linux-gnu = None
CMAKE_GENERATOR_x86_64_unknown_linux_gnu = None
HOST_CMAKE_GENERATOR = None
CMAKE_GENERATOR = None
CMAKE_PREFIX_PATH_x86_64-unknown-linux-gnu = None
CMAKE_PREFIX_PATH_x86_64_unknown_linux_gnu = None
HOST_CMAKE_PREFIX_PATH = None
CMAKE_PREFIX_PATH = Some("/homes/johannes/mambaforge/envs/build:/homes/johannes/mambaforge/envs/build/x86_64-conda-linux-gnu/sysroot/usr")
CMAKE_x86_64-unknown-linux-gnu = None
CMAKE_x86_64_unknown_linux_gnu = None
HOST_CMAKE = None
CMAKE = None
running: "cmake" "/homes/johannes/.cargo/registry/src/github.com-1ecc6299db9ec823/libz-sys-1.1.8/src/zlib-ng" "-DBUILD_SHARED_LIBS=OFF" "-DZLIB_COMPAT=ON" "-DZLIB_ENABLE_TESTS=OFF" "-DWITH_GZFILEOP=ON" "-DCMAKE_INSTALL_PREFIX=/projects/koesterlab/varlociraptor-clinical-testcases/target/debug/build/libz-sys-c7199d5580f447fd/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -ffunction-sections -pipe -isystem /homes/johannes/mambaforge/envs/build/include" "-DCMAKE_C_COMPILER=/homes/johannes/mambaforge/envs/build/bin/x86_64-conda-linux-gnu-cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -ffunction-sections -pipe -isystem /homes/johannes/mambaforge/envs/build/include" "-DCMAKE_CXX_COMPILER=/homes/johannes/mambaforge/envs/build/bin/x86_64-conda-linux-gnu-c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -ffunction-sections -pipe -isystem /homes/johannes/mambaforge/envs/build/include" "-DCMAKE_ASM_COMPILER=/homes/johannes/mambaforge/envs/build/bin/x86_64-conda-linux-gnu-cc" "-DCMAKE_BUILD_TYPE=Debug"
-- Using CMake version 3.25.1
-- ZLIB_HEADER_VERSION: 1.2.11
-- ZLIBNG_HEADER_VERSION: 2.1.0.devel
-- Arch detected: 'x86_64'
-- Basearch of 'x86_64' has been detected as: 'x86'
-- Architecture-specific source files: arch/x86/x86_features.c;arch/x86/slide_hash_avx2.c;arch/x86/chunkset_avx.c;arch/x86/compare256_avx2.c;arch/x86/adler32_avx2.c;arch/x86/adler32_avx512.c;arch/x86/adler32_avx512_vnni.c;arch/x86/chunkset_sse41.c;arch/x86/adler32_sse42.c;arch/x86/insert_string_sse42.c;arch/x86/chunkset_sse2.c;arch/x86/compare256_sse2.c;arch/x86/slide_hash_sse2.c;arch/x86/adler32_ssse3.c;arch/x86/crc32_fold_pclmulqdq.c
-- The following features have been enabled:
* CMAKE_BUILD_TYPE, Build type: Debug (selected)
* AVX2_SLIDEHASH, Support AVX2 optimized slide_hash, using "-mavx2"
* AVX_CHUNKSET, Support AVX optimized chunkset, using "-mavx2"
* AVX2_COMPARE256, Support AVX2 optimized compare256, using "-mavx2"
* AVX2_ADLER32, Support AVX2-accelerated adler32, using "-mavx2"
* AVX512_ADLER32, Support AVX512-accelerated adler32, using "-mavx512f -mavx512dq -mavx512bw -mavx512vl -mtune=cascadelake"
* AVX512VNNI_ADLER32, Support AVX512VNNI adler32, using "-mavx512f -mavx512dq -mavx512bw -mavx512vl -mavx512vnni -mtune=cascadelake"
* SSE42_CRC, Support SSE4.2 optimized CRC hash generation, using "-msse4.2"
* SSSE3_ADLER32, Support SSSE3-accelerated adler32, using "-mssse3"
* PCLMUL_CRC, Support CRC hash generation using PCLMULQDQ, using "-mssse3 -msse4.2 -mpclmul"
* WITH_GZFILEOP, Compile with support for gzFile related functions
* ZLIB_COMPAT, Compile with zlib compatible API
* WITH_SANITIZER, Enable sanitizer support
* WITH_OPTIM, Build with optimisation
* WITH_NEW_STRATEGIES, Use new strategies
* WITH_AVX2, Build with AVX2
* WITH_AVX512, Build with AVX512
* WITH_AVX512VNNI, Build with AVX512 VNNI
* WITH_SSE2, Build with SSE2
* WITH_SSSE3, Build with SSSE3
* WITH_SSE41, Build with SSE41
* WITH_SSE42, Build with SSE42
* WITH_PCLMULQDQ, Build with PCLMULQDQ
-- The following features have been disabled:
* FORCE_TZCNT, Assume CPU is TZCNT capable
* ZLIB_SYMBOL_PREFIX, Publicly exported symbols DO NOT have a custom prefix
* ZLIB_ENABLE_TESTS, Build test binaries
* ZLIB_DUAL_LINK, Dual link tests against system zlib
* WITH_FUZZERS, Build test/fuzz
* WITH_BENCHMARKS, Build test/benchmarks
* WITH_BENCHMARK_APPS, Build application benchmarks
* WITH_NATIVE_INSTRUCTIONS, Instruct the compiler to use the full instruction set on this host (gcc/clang -march=native)
* WITH_MAINTAINER_WARNINGS, Build with project maintainer warnings
* WITH_CODE_COVERAGE, Enable code coverage reporting
* WITH_INFLATE_STRICT, Build with strict inflate distance checking
* WITH_INFLATE_ALLOW_INVALID_DIST, Build with zero fill for inflate invalid distances
* WITH_VPCLMULQDQ, Build with VPCLMULQDQ
* INSTALL_UTILS, Copy minigzip and minideflate during install
-- Configuring done
-- Generating done
-- Build files have been written to: /projects/koesterlab/varlociraptor-clinical-testcases/target/debug/build/libz-sys-c7199d5580f447fd/out/build
running: "cmake" "--build" "." "--target" "install" "--config" "Debug"
[100%] Built target zlib
Install the project...
-- Install configuration: "Debug"
-- Installing: /usr/local/lib/libz.a
--- stderr
CMake Error at cmake_install.cmake:54 (file):
file INSTALL cannot copy file
"/projects/koesterlab/varlociraptor-clinical-testcases/target/debug/build/libz-sys-c7199d5580f447fd/out/build/libz.a"
to "/usr/local/lib/libz.a": Permission denied.
make: *** [Makefile:100: install] Error 1
thread 'main' panicked at '
command did not execute successfully, got: exit status: 2
Is there anything we can do against that?
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the crate's build.rs and the zlib-ng CMake install configuration shown in the build output, then reproduce the failure with the static feature enabled. Done means the crate builds successfully without attempting to install libz.a under /usr/local.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- cmake, rust
- Domain
- build-system
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100