rstudio / rstudio/reticulate

Flushing and comments

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Dominant language
R
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Description

I am running the below code chunk with knitr in RStudio.

<<engine='python'>>=

#comment 1
a = True

a[0] = False

#comment 2


@

The expected output is that it prints an error immediately after a[0] = False but it somehow buffers until after #comment 2 as indicated below:

image

My temporary fix is to:

<<engine='python', echo=FALSE>>=
def fl():
  import sys
  sys.stdout.flush()
  sys.stderr.flush()
@  

<<engine='python'>>=

#comment 1
a = True

a[0] = False
fl()

#comment 2

@

image

However, I can't be putting fl() everywhere. How can I make it print before comment 2 without additional lines of code such as fl()?

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Reproduce the issue with the knitr Python engine using the code shown, focusing on the output produced after a[0] = False and before #comment 2. Trace how reticulate and knitr capture or flush Python stdout and stderr; done means the error appears before the later comment without adding fl() calls.

Written by the indexing model from the issue text.

Assessment

Tech stack
python, r
Domain
developer-experience
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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