conda_list() does not list my environments
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Description
I'm trying to get going with reticulate within my conda environments, but I cant get reticulate to find my environments. Running conda_list() without specifying my conda executable results in this output.
> conda_list()
name python
1 Anaconda3 C:\\ProgramData\\Anaconda3\\python.exe
But if I run conda env list within my cmd, I get the following:
(base) C:\>conda env list
# conda environments:
#
base * C:\ProgramData\Anaconda3
dummy3 C:\Users\rata\.conda\envs\dummy3
I thought the root of this is probably caused by reticulate using a different conda executable than what I'm using in my cmd. So I copied the output of path from cmd into R, searched all paths for conda.*-Files and ran conda_list() on each of these files. I was hoping that at least one of them would return the full list of my environments, but this does not seem to be the case. What am I doing wrong?
library(reticulate)
#> Warning: Paket 'reticulate' wurde unter R Version 3.6.1 erstellt
library(tidyverse)
#> Warning: Paket 'tidyverse' wurde unter R Version 3.6.1 erstellt
#> Warning: Paket 'dplyr' wurde unter R Version 3.6.1 erstellt
paths <- "C:/ProgramData/Anaconda3;C:/ProgramData/Anaconda3/Library/mingw-w64/bin;C:/ProgramData/Anaconda3/Library/usr/bin;C:/ProgramData/Anaconda3/Library/bin;C:/ProgramData/Anaconda3/Scripts;C:/ProgramData/Anaconda3/bin;C:/ProgramData/Anaconda3/condabin;C:/Program Files/Python36/Scripts/;C:/Program Files/Python36/;C:/WINDOWS/system32;C:/WINDOWS;C:/WINDOWS/System32/Wbem;C:/WINDOWS/System32/WindowsPowerShell/v1.0/;C:/WINDOWS/System32/OpenSSH/;C:/Program Files/Git/cmd;C:/Program Files/FME/;C:/Program Files (x86)/Sennheiser/SoftphoneSDK/;C:/Users/rata/AppData/Local/Microsoft/WindowsApps;C:/Users/rata/AppData/Roaming/TinyTeX/bin/win32"
paths <- strsplit(paths,";")[[1]]
paths_conda <- map(paths,function(x){
fil <- list.files(x,full.names = F)
fil <- fil[grepl("conda\\.",fil,ignore.case = FALSE)]
if(length(fil)>0){list(paste(x,fil,sep = "/"))}
})
paths_conda <- paths_conda[lengths(paths_conda)>0]
paths_conda <- unlist(paths_conda)
paths_conda
#> [1] "C:/ProgramData/Anaconda3/Library/bin/conda.bat"
#> [2] "C:/ProgramData/Anaconda3/Scripts/anaconda.exe"
#> [3] "C:/ProgramData/Anaconda3/Scripts/conda.exe"
#> [4] "C:/ProgramData/Anaconda3/condabin/conda.bat"
map_dfr(paths_conda,~conda_list(.x))
#> name python
#> 1 Anaconda3 C:\\ProgramData\\Anaconda3\\python.exe
#> 2 Anaconda3 C:\\ProgramData\\Anaconda3\\python.exe
#> 3 Anaconda3 C:\\ProgramData\\Anaconda3\\python.exe
Created on 2019-10-21 by the reprex package (v0.3.0)
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the reported difference between reticulate's conda_list() and the command-line conda env list on Windows. Inspect the conda_list() entry point and compare the environments each command discovers. Done means conda_list() includes the dummy3 environment shown by conda env list.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- anaconda, r
- Domain
- developer-experience
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 32/100