research-software-ecosystem / research-software-ecosystem/content
Remove EDAM term labels before upload in runbiotools
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Description
Should remove them because outdated term labels create errors, e.g.:
"topic": [
{
"term": "Immunoproteins, genes and antigens",
"uri": "http://edamontology.org/topic_2830"
},
For this term the label in the latest version of EDAM has changed, creating an error when we upload the tool:
ERROR:root:error while uploading ../content/data/swehla/swehla.biotools.json (status 400): {"topic":[{"general_errors":["The term does not match the URI: Immunoproteins, genes and antigens, http://edamontology.org/topic_2830."]},{},{},{}]}
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start in the runbiotools upload path and inspect the sample ../content/data/swehla/swehla.biotools.json, focusing on its EDAM term labels. Reproduce the upload error and verify that the tool uploads without the URI/label mismatch.
Written by the indexing model from the issue text.
Assessment
- Domain
- content
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100