research-software-ecosystem / research-software-ecosystem/content
Order uploaded tools in runbiotools to handle tool "dependencies"
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Description
This to avoid that kind of message:
error while uploading ../content/data/protk/protk.biotools.json (status 400): {"relation":[{"biotoolsID":["There is no resource with biotoolsID:XTandem;The resource might have been deleted."]}],"editPermission":{"authors":[{"general_errors":["Specified user does not exsist: proteomics.bio.tools."]}]}}
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the runbiotools upload entry point and examining how uploaded tools are ordered. Use the reported protk.biotools.json failure involving the missing XTandem relation as the reproduction case; done means dependent resources upload in an order that avoids this error.
Written by the indexing model from the issue text.
Assessment
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100