quarto-dev / quarto-dev/quarto-cli
Custom crossref cannot be resolved
@cscheid is already working on this.
Since Mar 2, 2024.
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Description
Bug description
I wanted to cross reference supplementary figures in my manuscript so I included a custom crossref for suppfig.
Unfortunately, after rendering quarto gives a warning:
WARNING (/opt/quarto/share/filters/main.lua:12315) Unable to resolve crossref @suppfig-demo-plot
I tested multiple possibilities to check if I am doing something wrong, but I think that is a bug.
Steps to reproduce
Render the following qmd:
---
title: "Title Goes Here"
author:
- Jane Doe:
crossref:
custom:
- kind: float
key: suppfig
latex-env: suppfig
reference-prefix: Figure S
space-before-numbering: false
latex-list-of-description: Supplementary Figure
---
# Results
```{r}
#| label: fig-demo-plot
#| fig-cap: "A plot of random numbers"
plot(rnorm(10))
```
```{r}
#| label: suppfig-demo-plot
#| fig-cap: "A plot of random numbers"
plot(rnorm(20))
```
@fig-demo-plot shows how we can have a caption and cross-reference for a plot.
@suppfig-demo-plot shows how we can't have a caption and cross-reference for supplementary figures.
Expected behavior
I expect to get a rendered crossreference for a supplementary figure
Actual behavior
Now I get a warning that the reference could not be resolved, and the figure is not labeled.
Your environment
─ Session info ───────────────────────────────────────────────────────────────
setting value
version R version 4.3.2 (2023-10-31)
os Ubuntu 22.04.3 LTS
system x86_64, linux-gnu
ui X11
language (EN)
collate en_US.UTF-8
ctype en_US.UTF-8
tz Europe/Berlin
date 2024-03-02
pandoc 3.1.1 @ /usr/lib/rstudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)
Quarto check output
Quarto 1.5.22
[✓] Checking versions of quarto binary dependencies...
Pandoc version 3.1.11: OK
Dart Sass version 1.69.5: OK
Deno version 1.37.2: OK
[✓] Checking versions of quarto dependencies......OK
[✓] Checking Quarto installation......OK
Version: 1.5.22
Path: /opt/quarto/bin
[✓] Checking tools....................OK
TinyTeX: (external install)
Chromium: (not installed)
[✓] Checking LaTeX....................OK
Using: TinyTex
Path: /home/wolass/.TinyTeX/bin/x86_64-linux
Version: 2023
[✓] Checking basic markdown render....OK
[✓] Checking Python 3 installation....OK
Version: 3.10.12
Path: /usr/bin/python3
Jupyter: (None)
Jupyter is not available in this Python installation.
Install with python3 -m pip install jupyter
[✓] Checking R installation...........OK
Version: 4.3.2
Path: /usr/lib/R
LibPaths:
- /home/wolass/R/x86_64-pc-linux-gnu-library/4.3
- /usr/local/lib/R/site-library
- /usr/lib/R/site-library
- /usr/lib/R/library
knitr: 1.45
rmarkdown: 2.25
[✓] Checking Knitr engine render......OK
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