quarto-dev / quarto-dev/quarto-cli

Code annotation line highlight overflow and gutter miss-alignment

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bug code-annotation code-blocks regression
Dominant language
JavaScript
Stars
6k
Forks
458
Avg merge
1d 9h
Merged PRs (30d)
41

Description

Bug description

From https://github.com/quarto-dev/quarto-cli/pull/13429

The code annotation line highlights overflow on the left.
There is also a misalignment in the highlight between the line and the gutter (gutter is a bit lower).

Behaviour in 1.7:

Image
Steps to reproduce
---
title: "Code annotation line highlight overflow"
format: html
code-annotations: select
---

```{.python}
# Some comment
# to avoid overlapping copy button and annotation marker
import polars as pl # <1>
```

1. This is an annotation.
Actual behavior
Image
Quarto check output
Quarto 99.9.9
[✓] Checking environment information...
      Quarto cache location: /Users/mcanouil/Library/Caches/quarto
[✓] Checking versions of quarto binary dependencies...
      Pandoc version 3.6.3: OK
      Dart Sass version 1.87.0: OK
      NOTE: Deno version 2.4.5 does not strictly match 2.3.1 and strict checking is enabled. Please use 2.3.1.
      Typst version 0.13.0: OK
[✓] Checking versions of quarto dependencies......OK
[✓] Checking Quarto installation......OK
      Version: 99.9.9
      commit: e858bba000cc35277bdb8911d6ad86ccc74e6552
      Path: /Users/mcanouil/Projects/quarto-dev/quarto-cli/package/dist/bin

[✓] Checking tools....................OK
      TinyTeX: v2025.08.02
      Chromium: (not installed)

[✓] Checking LaTeX....................OK
      Using: TinyTex
      Path: /Users/mcanouil/Library/TinyTeX/bin/universal-darwin
      Version: 2025

[✓] Checking Chrome Headless....................OK
      Using: Chrome found on system
      Path: /Applications/Brave Browser.app/Contents/MacOS/Brave Browser
      Source: QUARTO_CHROMIUM

[✓] Checking basic markdown render....OK

[✓] Checking Python 3 installation....OK
      Version: 3.13.2
      Path: /Users/mcanouil/Projects/quarto-dev/quarto-playground/.venv/bin/python3
      Jupyter: 5.8.1
      Kernels: julia-1.11, uv, python3

[✓] Checking Jupyter engine render....OK

(\) Checking R installation...........ℹ R version 4.5.1 (2025-06-13)
! Config '~/.Rprofile' was loaded!
[✓] Checking R installation...........OK
      Version: 4.5.1
      Path: /Library/Frameworks/R.framework/Resources
      LibPaths:
        - /Users/mcanouil/Projects/quarto-dev/quarto-playground/renv/library/macos/R-4.5/aarch64-apple-darwin20
        - /Users/mcanouil/Library/Caches/org.R-project.R/R/renv/sandbox/macos/R-4.5/aarch64-apple-darwin20/4cd76b74
      knitr: 1.50
      rmarkdown: 2.29

[✓] Checking Knitr engine render......OK

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by rendering the provided Quarto document with HTML format and code-annotations set to select, then inspect the generated annotation highlight and gutter alignment. Verify the fix against the reproduced case so the highlight no longer overflows on the left and the gutter aligns vertically with the highlighted line.

Written by the indexing model from the issue text.

Assessment

Tech stack
javascript
Domain
frontend
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

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