Quarto LaTeX engine needlessly runs two passes

Bug description

Even for the simplest of the documents, without TOC, references, citations, etc. the engine runs two passes. And even after the first rendering it keeps running LaTeX twice.

Vanilla latexmk is smarter here, or perhaps careless, but at least it detects when the file hasn't changed at all, and after the first run, if you keep the ancillary files, it tends to run just one pass. In any case, I can't use vanilla latexml because of https://github.com/quarto-dev/quarto-cli/issues/9016.

Steps to reproduce

Create a document like:

---
latex-min-runs: 1
latex-clean: false
---

# Section

Content

And run quarto render <doc> --to pdf on it.

Expected behavior

LaTeX is run once, or at least after the first rendering it's run once.

Actual behavior

Latex is always run at least twice.

Your environment

• Command line
• macOS Sonoma 14.4.1

Quarto check output

Quarto 1.5.56
[✓] Checking versions of quarto binary dependencies...
      Pandoc version 3.2.0: OK
      Dart Sass version 1.70.0: OK
      Deno version 1.41.0: OK
      Typst version 0.11.0: OK
[✓] Checking versions of quarto dependencies......OK
[✓] Checking Quarto installation......OK
      Version: 1.5.56
      Path: /Users/carlos/.venvs/base/lib/python3.12/site-packages/quarto_cli/bin

[✓] Checking tools....................OK
      TinyTeX: (not installed)
      Chromium: (not installed)

[✓] Checking LaTeX....................OK
      Using: Installation From Path
      Path: /opt/homebrew/bin
      Version: undefined

[✓] Checking basic markdown render....OK

[✓] Checking Python 3 installation....OK
      Version: 3.12.4
      Path: /Users/carlos/.venvs/base/bin/python3
      Jupyter: 5.7.2
      Kernels: python3

[✓] Checking Jupyter engine render....OK

[✓] Checking R installation...........OK
      Version: 4.4.1
      Path: /opt/homebrew/Cellar/r/4.4.1/lib/R
      LibPaths:
        - /Users/carlos/.rlibs/base
        - /Users/carlos/Documents/Util
        - /opt/homebrew/lib/R/4.4/site-library
        - /opt/homebrew/Cellar/r/4.4.1/lib/R/library
      knitr: 1.45
      rmarkdown: 2.26

[✓] Checking Knitr engine render......OK

Start by reproducing the issue with the shown markdown document and quarto render <doc> --to pdf, using latex-min-runs: 1 and latex-clean: false; search the render path for handling of these options and LaTeX pass decisions. Done means a simple document runs LaTeX once, including on subsequent renders when ancillary files are retained.