MIMIC Dataset for Batch RL [Feature Request]
Open
@vmoens is already working on this.
Since Nov 7, 2023.
enhancement
- Dominant language
- Python
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Description
Motivation
Want to add the MIMIC Dataset, generally used for Sepsis Treatment for benchmarking Batch-RL algorithms in a easy & efficient way. This dataset is used in many BatchRL papers for sepsis treatment. See: https://github.com/asjad99/MIMIC_RL_COACH
Solution
Use D4RL wrapper (https://github.com/Farama-Foundation/D4RL) to download and load the dataset ready for training using simple python commands
Alternatives
For larger datasets it maybe best to download the files partially and then delete them as training progressing while simultaneously downloading remaining data
Additional context
Checklist
- Had initial discussion with @vmoens
- Check if it is allowed to download and use the dataset directly, while verifying or redirecting users who have fulfilled the requirements to physionet for permission. Currently it says, to download MIMIC, you must become a credentialed user on PhysioNet
- Create a wrapper to download, verify/redrect and load the dataset
Contributor guide
First steps
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Assessment
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