python-poetry / python-poetry/poetry

`poetry install` with namespace packages has race condition leading to broken files

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Description

Description

If multiple packages uses the same namespace and have files with the same name, they will overwrite each other.
This is by design, as seen in this line.

However sometimes it seems to write to the file at the same time, leading to a file that is a mix of multiple files and often not valid python. My guess is that there needs to be a file lock here

Workarounds

Use a post install script to fix the files. But this is very manual

Poetry Installation Method

pip

Operating System

macOS 14.4

Poetry Version

1.8.2

Poetry Configuration
cache-dir = "/Users/sras/Library/Caches/pypoetry"
experimental.system-git-client = false
installer.max-workers = null
installer.modern-installation = true
installer.no-binary = null
installer.parallel = true
keyring.enabled = true
solver.lazy-wheel = true
virtualenvs.create = true
virtualenvs.in-project = true
virtualenvs.options.always-copy = false
virtualenvs.options.no-pip = false
virtualenvs.options.no-setuptools = false
virtualenvs.options.system-site-packages = false
virtualenvs.path = "{cache-dir}/virtualenvs"  # /Users/sras/Library/Caches/pypoetry/virtualenvs
virtualenvs.prefer-active-python = false
virtualenvs.prompt = "{proje
Python Sysconfig
Platform: "macosx-13-arm64"
Python version: "3.11"
Current installation scheme: "venv"

Paths: 
	data = "/Users/sras/dev/test_dbt_install/poetry_venv"
	include = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/include/python3.11"
	platinclude = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/include/python3.11"
	platlib = "/Users/sras/dev/test_dbt_install/poetry_venv/lib/python3.11/site-packages"
	platstdlib = "/Users/sras/dev/test_dbt_install/poetry_venv/lib/python3.11"
	purelib = "/Users/sras/dev/test_dbt_install/poetry_venv/lib/python3.11/site-packages"
	scripts = "/Users/sras/dev/test_dbt_install/poetry_venv/bin"
	stdlib = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11"

Variables: 
	ABIFLAGS = ""
	AC_APPLE_UNIVERSAL_BUILD = "0"
	AIX_BUILDDATE = "0"
	AIX_GENUINE_CPLUSPLUS = "0"
	ALIGNOF_LONG = "8"
	ALIGNOF_SIZE_T = "8"
	ALT_SOABI = "0"
	ANDROID_API_LEVEL = "0"
	AR = "/usr/bin/xcrun ar"
	ARFLAGS = "rcs"
	BASECFLAGS = "-Wsign-compare -Wunreachable-code -fno-common -dynamic"
	BASECPPFLAGS = ""
	BASEMODLIBS = ""
	BINDIR = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/bin"
	BINLIBDEST = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11"
	BLDLIBRARY = ""
	BLDSHARED = "clang -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk"
	BOOTSTRAP_HEADERS = "\"
	BUILDEXE = ".exe"
	BUILDPYTHON = "python.exe"
	BUILD_GNU_TYPE = "aarch64-apple-darwin22.6.0"
	BYTESTR_DEPS = "\"
	CC = "clang"
	CCSHARED = ""
	CFLAGS = "-Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk"
	CFLAGSFORSHARED = ""
	CFLAGS_ALIASING = "-fno-strict-aliasing"
	CONFIGFILES = "configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in"
	CONFIGURE_CFLAGS = "-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk"
	CONFIGURE_CFLAGS_NODIST = "-I/opt/homebrew/include -flto -std=c11 -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wstrict-prototypes -Werror=implicit-function-declaration -fvisibility=hidden"
	CONFIGURE_CPPFLAGS = "-I/opt/homebrew/include"
	CONFIGURE_LDFLAGS = "-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk"
	CONFIGURE_LDFLAGS_NODIST = "-L/opt/homebrew/lib -Wl,-rpath,/opt/homebrew/lib -flto -Wl,-export_dynamic -g"
	CONFIGURE_LDFLAGS_NOLTO = "-flto=thin"
	CONFIG_ARGS = "'--prefix=/opt/homebrew/opt/python@3.11' '--enable-ipv6' '--datarootdir=/opt/homebrew/opt/python@3.11/share' '--datadir=/opt/homebrew/opt/python@3.11/share' '--without-ensurepip' '--enable-loadable-sqlite-extensions' '--with-openssl=/opt/homebrew/opt/openssl@3' '--enable-optimizations' '--with-system-expat' '--with-system-libmpdec' '--with-readline=editline' '--with-lto' '--enable-framework=/opt/homebrew/opt/python@3.11/Frameworks' '--with-dtrace' '--with-dbmliborder=ndbm' 'MACOSX_DEPLOYMENT_TARGET=13' 'CFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk' 'CFLAGS_NODIST=-I/opt/homebrew/include' 'LDFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk' 'LDFLAGS_NODIST=-L/opt/homebrew/lib -Wl,-rpath,/opt/homebrew/lib' 'CPPFLAGS=-I/opt/homebrew/include' 'py_cv_module__tkinter=disabled' 'PKG_CONFIG_PATH=/opt/homebrew/opt/openssl@3/lib/pkgconfig:/opt/homebrew/opt/readline/lib/pkgconfig:/opt/homebrew/opt/sqlite/lib/pkgconfig:/opt/homebrew/opt/xz/lib/pkgconfig' 'PKG_CONFIG_LIBDIR=/usr/lib/pkgconfig:/opt/homebrew/Homebrew/Library/Homebrew/os/mac/pkgconfig/13' 'CC=clang'"
	CONFINCLUDEDIR = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/include"
	CONFINCLUDEPY = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/include/python3.11"
	COREPYTHONPATH = ""
	COVERAGE_INFO = "/private/tmp/pythonA3.11-20231102-5119-1b406mq/Python-3.11.6/coverage.info"
	COVERAGE_LCOV_OPTIONS = "--rc lcov_branch_coverage=1"
	COVERAGE_REPORT = "/private/tmp/pythonA3.11-20231102-5119-1b406mq/Python-3.11.6/lcov-report"
	COVERAGE_REPORT_OPTIONS = "--rc lcov_branch_coverage=1 --branch-coverage --title "CPython 3.11 LCOV report [commit $(shell )]""
	CPPFLAGS = "-I. -I./Include -I/opt/homebrew/include"
	CXX = "clang++"
	DECIMAL_CFLAGS = "-DCONFIG_64=1 -DANSI=1 -DHAVE_UINT128_T=1"
	DECIMAL_LDFLAGS = "-lmpdec"
	DEEPFREEZE_C = "Python/deepfreeze/deepfreeze.c"
	DEEPFREEZE_DEPS = "./Tools/scripts/deepfreeze.py _bootstrap_python ./Programs/_freeze_module.py \"
	DEEPFREEZE_OBJS = "Python/deepfreeze/deepfreeze.o"
	DESTDIRS = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11 /opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib /opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11 /opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload"
	DESTLIB = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11"
	DESTPATH = ""
	DESTSHARED = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11/lib-dynload"
	DFLAGS = ""
	DIRMODE = "755"
	DIST = "README.rst ChangeLog configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in Include Lib Misc Ext-dummy"
	DISTDIRS = "Include Lib Misc Ext-dummy"
	DISTFILES = "README.rst ChangeLog configure configure.ac acconfig.h pyconfig.h.in Makefile.pre.in"
	DLINCLDIR = "."
	DLLLIBRARY = ""
	DOUBLE_IS_ARM_MIXED_ENDIAN_IEEE754 = "0"
	DOUBLE_IS_BIG_ENDIAN_IEEE754 = "0"
	DOUBLE_IS_LITTLE_ENDIAN_IEEE754 = "1"
	DTRACE = "/usr/sbin/dtrace"
	DTRACE_DEPS = "\"
	DTRACE_HEADERS = "Include/pydtrace_probes.h"
	DTRACE_OBJS = ""
	DYNLOADFILE = "dynload_shlib.o"
	ENABLE_IPV6 = "1"
	ENSUREPIP = "no"
	EXE = ""
	EXEMODE = "755"
	EXPAT_CFLAGS = ""
	EXPAT_LDFLAGS = "-lexpat"
	EXPORTSFROM = ""
	EXPORTSYMS = ""
	EXTRATESTOPTS = ""
	EXTRA_CFLAGS = ""
	EXT_SUFFIX = ".cpython-311-darwin.so"
	FILEMODE = "644"
	FLOAT_WORDS_BIGENDIAN = "0"
	FREEZE_MODULE = "./_bootstrap_python ./Programs/_freeze_module.py"
	FREEZE_MODULE_BOOTSTRAP = "./Programs/_freeze_module"
	FREEZE_MODULE_BOOTSTRAP_DEPS = "Programs/_freeze_module"
	FREEZE_MODULE_DEPS = "_bootstrap_python ./Programs/_freeze_module.py"
	FROZEN_FILES_IN = "\"
	FROZEN_FILES_OUT = "\"
	GETPGRP_HAVE_ARG = "0"
	GITBRANCH = ""
	GITTAG = ""
	GITVERSION = ""
	GNULD = "no"
	HAVE_ACCEPT = "1"
	HAVE_ACCEPT4 = "0"
	HAVE_ACOSH = "1"
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	HAVE_ALARM = "1"
	HAVE_ALIGNED_REQUIRED = "0"
	HAVE_ALLOCA_H = "1"
	HAVE_ALTZONE = "0"
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	HAVE_ASM_TYPES_H = "0"
	HAVE_ATANH = "1"
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	HAVE_BLUETOOTH_BLUETOOTH_H = "0"
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	HAVE_BROKEN_PIPE_BUF = "0"
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	HAVE_BROKEN_PTHREAD_SIGMASK = "0"
	HAVE_BROKEN_SEM_GETVALUE = "1"
	HAVE_BROKEN_UNSETENV = "0"
	HAVE_BUILTIN_ATOMIC = "1"
	HAVE_BZLIB_H = "1"
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	HAVE_CHMOD = "1"
	HAVE_CHOWN = "1"
	HAVE_CHROOT = "1"
	HAVE_CLOCK = "1"
	HAVE_CLOCK_GETRES = "1"
	HAVE_CLOCK_GETTIME = "1"
	HAVE_CLOCK_NANOSLEEP = "0"
	HAVE_CLOCK_SETTIME = "1"
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	PY_CORE_CFLAGS = "-Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -I/opt/homebrew/include -flto -std=c11 -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wstrict-prototypes -Werror=implicit-function-declaration -fvisibility=hidden -fprofile-instr-use=code.profclangd -I./Include/internal -I. -I./Include -I/opt/homebrew/include -DPy_BUILD_CORE"
	PY_CORE_LDFLAGS = "-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -L/opt/homebrew/lib -Wl,-rpath,/opt/homebrew/lib -flto -Wl,-export_dynamic -g"
	PY_CPPFLAGS = "-I. -I./Include -I/opt/homebrew/include"
	PY_ENABLE_SHARED = "0"
	PY_FORMAT_SIZE_T = ""z""
	PY_LDFLAGS = "-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk"
	PY_LDFLAGS_NODIST = "-L/opt/homebrew/lib -Wl,-rpath,/opt/homebrew/lib -flto -Wl,-export_dynamic -g"
	PY_LDFLAGS_NOLTO = "-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -flto=thin"
	PY_SQLITE_ENABLE_LOAD_EXTENSION = "1"
	PY_SQLITE_HAVE_SERIALIZE = "1"
	PY_SSL_DEFAULT_CIPHERS = "1"
	PY_SSL_DEFAULT_CIPHER_STRING = "0"
	PY_STDMODULE_CFLAGS = "-Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX13.sdk -I/opt/homebrew/include -flto -std=c11 -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -Wstrict-prototypes -Werror=implicit-function-declaration -fvisibility=hidden -fprofile-instr-use=code.profclangd -I./Include/internal -I. -I./Include -I/opt/homebrew/include"
	PY_SUPPORT_TIER = "2"
	Py_DEBUG = "0"
	Py_ENABLE_SHARED = "0"
	Py_HASH_ALGORITHM = "0"
	Py_STATS = "0"
	Py_TRACE_REFS = "0"
	QUICKTESTOPTS = "-x test_subprocess test_io test_lib2to3 \"
	READELF = ":"
	RESSRCDIR = "Mac/Resources/framework"
	RETSIGTYPE = "void"
	RUNSHARED = "DYLD_FRAMEWORK_PATH=/private/tmp/pythonA3.11-20231102-5119-1b406mq/Python-3.11.6"
	SCRIPTDIR = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib"
	SETPGRP_HAVE_ARG = "0"
	SHELL = "/bin/sh"
	SHLIBS = "-ldl  -framework CoreFoundation"
	SHLIB_SUFFIX = ".so"
	SIGNED_RIGHT_SHIFT_ZERO_FILLS = "0"
	SITEPATH = ""
	SIZEOF_DOUBLE = "8"
	SIZEOF_FLOAT = "4"
	SIZEOF_FPOS_T = "8"
	SIZEOF_INT = "4"
	SIZEOF_LONG = "8"
	SIZEOF_LONG_DOUBLE = "8"
	SIZEOF_LONG_LONG = "8"
	SIZEOF_OFF_T = "8"
	SIZEOF_PID_T = "4"
	SIZEOF_PTHREAD_KEY_T = "8"
	SIZEOF_PTHREAD_T = "8"
	SIZEOF_SHORT = "2"
	SIZEOF_SIZE_T = "8"
	SIZEOF_TIME_T = "8"
	SIZEOF_UINTPTR_T = "8"
	SIZEOF_VOID_P = "8"
	SIZEOF_WCHAR_T = "4"
	SIZEOF__BOOL = "1"
	SOABI = "cpython-311-darwin"
	SRCDIRS = "Modules   Modules/_blake2   Modules/_ctypes   Modules/_decimal   Modules/_decimal/libmpdec   Modules/_io   Modules/_multiprocessing   Modules/_sha3   Modules/_sqlite   Modules/_sre   Modules/_xxtestfuzz   Modules/cjkcodecs   Modules/expat   Objects   Parser   Programs   Python   Python/frozen_modules   Python/deepfreeze"
	SRC_GDB_HOOKS = "./Tools/gdb/libpython.py"
	STATIC_LIBPYTHON = "1"
	STDC_HEADERS = "1"
	STRICT_SYSV_CURSES = "/* Don't use ncurses extensions */"
	STRIPFLAG = "-s"
	SUBDIRS = ""
	SUBDIRSTOO = "Include Lib Misc"
	SYSLIBS = ""
	SYS_SELECT_WITH_SYS_TIME = "1"
	TESTOPTS = ""
	TESTPATH = ""
	TESTPYTHON = "DYLD_FRAMEWORK_PATH=/private/tmp/pythonA3.11-20231102-5119-1b406mq/Python-3.11.6 ./python.exe -E"
	TESTPYTHONOPTS = ""
	TESTRUNNER = "DYLD_FRAMEWORK_PATH=/private/tmp/pythonA3.11-20231102-5119-1b406mq/Python-3.11.6 ./python.exe -E ./Tools/scripts/run_tests.py"
	TESTSUBDIRS = "ctypes/test \"
	TESTTIMEOUT = "1200"
	TEST_MODULES = "yes"
	THREAD_STACK_SIZE = "0x1000000"
	TIMEMODULE_LIB = "0"
	TIME_WITH_SYS_TIME = "1"
	TM_IN_SYS_TIME = "0"
	TZPATH = "/usr/share/zoneinfo:/usr/lib/zoneinfo:/usr/share/lib/zoneinfo:/etc/zoneinfo"
	UNICODE_DEPS = "\"
	UNIVERSALSDK = ""
	UPDATE_FILE = "./Tools/scripts/update_file.py"
	USE_COMPUTED_GOTOS = "0"
	VERSION = "3.11"
	WASM_ASSETS_DIR = "./opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11"
	WASM_STDLIB = "./opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11/lib/python3.11/os.py"
	WHEEL_PKG_DIR = ""
	WINDOW_HAS_FLAGS = "1"
	WITH_DECIMAL_CONTEXTVAR = "1"
	WITH_DOC_STRINGS = "1"
	WITH_DTRACE = "1"
	WITH_DYLD = "1"
	WITH_EDITLINE = "1"
	WITH_FREELISTS = "1"
	WITH_LIBINTL = "0"
	WITH_NEXT_FRAMEWORK = "1"
	WITH_PYMALLOC = "1"
	WITH_VALGRIND = "0"
	X87_DOUBLE_ROUNDING = "0"
	XMLLIBSUBDIRS = "xml xml/dom xml/etree xml/parsers xml/sax"
	abiflags = ""
	abs_builddir = "/private/tmp/pythonA3.11-20231102-5119-1b406mq/Python-3.11.6"
	abs_srcdir = "/private/tmp/pythonA3.11-20231102-5119-1b406mq/Python-3.11.6"
	base = "/Users/sras/dev/test_dbt_install/poetry_venv"
	datarootdir = "/opt/homebrew/opt/python@3.11/share"
	exec_prefix = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11"
	installed_base = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11"
	installed_platbase = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11"
	platbase = "/Users/sras/dev/test_dbt_install/poetry_venv"
	platlibdir = "lib"
	prefix = "/opt/homebrew/opt/python@3.11/Frameworks/Python.framework/Versions/3.11"
	projectbase = "/opt/homebrew/opt/python@3.11/bin"
	py_version = "3.11.6"
	py_version_nodot = "311"
	py_version_nodot_plat = ""
	py_version_short = "3.11"
	srcdir = "/opt/homebrew/Cellar/python@3.11/3.11.6_1/Frameworks/Python.framework/Versions/3.11/lib/python3.11/config-3.11-darwin"
	userbase = "/Users/sras/Library/Python/3.11"
Example pyproject.toml
[tool.poetry]
name = "test-dbt-install"
version = "0.1.0"
authors = []
description = ""
packages = [{include = "test_dbt_install", from = "src"}]

[tool.poetry.dependencies]
python = "^3.12"
dbt-core = "^1.7.10"
dbt-postgres = "^1.7.10"
dbt-duckdb = "^1.7.3"
dbt-snowflake = "^1.7.2"


[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"

If you keep running

rm -rf .venv; poetry install; poetry run python -c "import dbt; print(dbt)"

It will eventually fail.

Poetry Runtime Logs
...
  - Installing dbt-postgres (1.7.10): Pending...
  - Installing dbt-postgres (1.7.10): Installing...
  - Installing dbt-snowflake (1.7.2): Pending...
Installing /Users/sras/dev/test_dbt_install/.venv/lib/python3.12/site-packages/dbt/__init__.py over existing file
  - Installing dbt-snowflake (1.7.2): Installing...
  - Installing dbt-duckdb (1.7.3)
  - Installing dbt-postgres (1.7.10): Pending...
  - Installing dbt-postgres (1.7.10): Installing...
  - Installing dbt-postgres (1.7.10)
  - Installing dbt-snowflake (1.7.2): Pending...
  - Installing dbt-snowflake (1.7.2): Installing...
  - Installing dbt-snowflake (1.7.2)

Installing the current project: test-dbt-install (0.1.0)
  - Building package test-dbt-install in editable mode
  - Adding test_dbt_install.pth to /Users/sras/dev/test_dbt_install/.venv/lib/python3.12/site-packages for /Users/sras/dev/test_dbt_install
  - Adding the test_dbt_install-0.1.0.dist-info directory to /Users/sras/dev/test_dbt_install/.venv/lib/python3.12/site-packages
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/Users/sras/dev/test_dbt_install/.venv/lib/python3.12/site-packages/dbt/__init__.py", line 4
    ectories on sys.path named after the package which effectively combines both modules into a single namespace (dbt.adapters)
             ^^
SyntaxError: invalid syntax

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start in src/poetry/installation/wheel_installer.py around the referenced lines 49 and 59, focusing on parallel installation of namespace-package files with the same name. Reproduce the installation and verify whether the resulting file is intact rather than a mixture of package contents; completion should prevent corrupted files during this scenario.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
devtools
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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