pymc-devs / pymc-devs/pymc-examples

Error in `examples/spatial/malaria_prevalence.ipynb`

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Description

Something up with the CRS using these versions:

rasterio.__version__
# '1.4.2'
pyproj.__version__
# '3.7.0'
mapclassify.__version__
# '2.8.1'

Here is the tracback:

──────────────────────────────────────────── Error running examples/spatial/malaria_prevalence.ipynb ─────────────────────────────────────────────

---------------------------------------------------------------------------
Exception encountered at "In [7]":
---------------------------------------------------------------------------
KeyError                                  Traceback (most recent call last)
Cell In[7], line 13
      9 with rio.open(in_path) as src:
     11     img = src.read()
---> 13     src_crs = src.crs["init"].upper()
     14     min_lon, min_lat, max_lon, max_lat = src.bounds
     15     xs = gambia_gpdf_4326["geometry"].x

File rasterio/crs.pyx:885, in rasterio.crs.CRS.__getitem__()

KeyError: 'init'

Contributor guide

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First steps

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Research direction

Open examples/spatial/malaria_prevalence.ipynb and inspect cell In [7], especially the CRS access after opening the raster. Reproduce the failure with rasterio 1.4.2, pyproj 3.7.0, and mapclassify 2.8.1, then verify that the notebook runs successfully and produces the expected spatial output.

Written by the indexing model from the issue text.

Assessment

Tech stack
jupyter-notebook, python
Domain
data-visualization
Issue type
Bug
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

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