pydata / pydata/xarray

interpolate using quadratic returns nan

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bug
Dominant language
Python
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Description

What happened?

When using a multiple dimensions xarray (like time, x and y), the quadratic function is not working anymore with interpolate, it returns only nan. slinear is ok. quadratic is only ok when using only a dimension (like only a lat/lon value).

What did you expect to happen?

No response

Minimal Complete Verifiable Example
import xarray as xr

ds = xr.tutorial.load_dataset("ersstv5")
# Generate a subset
subset = ds['sst'].isel(time=slice(0,10),lat=slice(20,40),lon=slice(20,40))
## Plot images
subset.plot(col="time",col_wrap=6)

# Interpolate with quadratic
subset_quadratic = subset.resample(time='10D').interpolate('quadratic')
## subset_quadratic is now full of NaN
subset_quadratic.plot(col="time",col_wrap=6)

# Working with only time dimension
subset_quadratic = subset.isel(lat=0,lon=0).resample(time='10D').interpolate('quadratic')
subset_quadratic.plot()
MVCE confirmation
  • Minimal example — the example is as focused as reasonably possible to demonstrate the underlying issue in xarray.
  • Complete example — the example is self-contained, including all data and the text of any traceback.
  • Verifiable example — the example copy & pastes into an IPython prompt or Binder notebook, returning the result.
  • New issue — a search of GitHub Issues suggests this is not a duplicate.
  • Recent environment — the issue occurs with the latest version of xarray and its dependencies.
Relevant log output

No response

Anything else we need to know?

No response

Environment
INSTALLED VERSIONS ------------------ commit: None python: 3.12.3 | packaged by conda-forge | (main, Apr 15 2024, 18:20:11) [MSC v.1938 64 bit (AMD64)] python-bits: 64 OS: Windows OS-release: 11 machine: AMD64 processor: Intel64 Family 6 Model 186 Stepping 3, GenuineIntel byteorder: little LC_ALL: None LANG: en LOCALE: ('fr_FR', 'cp1252') libhdf5: 1.14.3 libnetcdf: None

xarray: 2024.5.0
pandas: 2.1.4
numpy: 1.26.4
scipy: 1.13.0
netCDF4: None
pydap: None
h5netcdf: 1.3.0
h5py: 3.11.0
zarr: 2.18.0
cftime: None
nc_time_axis: None
iris: None
bottleneck: None
dask: 2024.5.0
distributed: 2024.5.0
matplotlib: 3.8.4
cartopy: None
seaborn: 0.13.2
numbagg: None
fsspec: 2024.3.1
cupy: None
pint: None
sparse: None
flox: None
numpy_groupies: None
setuptools: 69.5.1
pip: 24.0
conda: None
pytest: None
mypy: None
IPython: 8.24.0
sphinx: 7.3.7

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by running the reported xarray tutorial example with subset.resample(time='10D').interpolate('quadratic'), comparing multidimensional output with the one-dimensional case. Trace the resample/interpolate entry points to identify where quadratic interpolation produces NaN across lat and lon, then add a regression test showing valid multidimensional results.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

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