attributes with dots
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- Dominant language
- Python
- Stars
- 10
- Forks
- 4
- Avg merge
- 3h 54m
- Merged PRs (30d)
- 4
Description
Is it possible to have attribute names with dots?
For example:
pep_version: 2.1.0
sample_table: "samples.csv"
sample_modifiers:
append:
sample_name: name
derive:
attributes: ["sample_name"]
sources:
name: "{accession}_{assembly_info.assembly_name}"
Right now I get the error:
In sample 'name' cannot correctly parse derived attribute source: {accession}_{'assembly_info.assembly_name'}. Caught exception: 'str' object has no attribute 'assembly_name''
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the configuration in the issue and trace how derived attribute sources parse dotted names. Determine whether the example can resolve assembly_info.assembly_name, then verify that the sample configuration completes without the reported parsing error.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100